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Somehow, I've never had a save problem with fGB32... it has something to do with the saves being recognized by "#" rather than rom name, which means that if your order of ROMs changed in your GB folder, all of the saves don't work anymore. If you don't like fGB32, you could always try GPvsGB; that's pretty good also, from what I've heard.
And for SMS/GG, just use SMS32 v0.5. I've found that it's the better emulator anyway, although it does have a sound clicking problem sometimes (about 20% of the time, although it's not really that bad).
P.S. You know, the GBA D-stick also makes a sound when you move it. I don't really get bothered by the GP32's click... if it bothers you, just listen to your games through earphones.
And for SMS/GG, just use SMS32 v0.5. I've found that it's the better emulator anyway, although it does have a sound clicking problem sometimes (about 20% of the time, although it's not really that bad).
P.S. You know, the GBA D-stick also makes a sound when you move it. I don't really get bothered by the GP32's click... if it bothers you, just listen to your games through earphones.