That is a guarantee, the Pandora had a TRRS connector for headsets, and the Pyra is going to have one. It's been a major source of contention, actually.
The problem is that "the manner that Apple does it" is not the standard way it had been done for years, when Apple released their headsets they reversed the microphone and ground lines which made their headsets incompatible with existing ones.
At the time the Pandora came out this was fine. The Pandora used the old standard, everyone but Apple used the old standard, headphones for iPhone were specifically labeled "for iPhone", if it didn't say "for iPhone" it wouldn't work on an iPhone and it would be fine to work on anything else.
Over the last couple years that has changed, and a lot of companies are now using the iPhone "standard". If you pick up a headset for a phone there isn't really a way to tell, just by looking at it, whether it uses the old standard or the new.
The Pyra is going to solve this by having a switch: it defaults to the old standard, but if you buy something that uses the Apple standard you just flip the switch and it works again.
This all being said, it's completely irrelevant to the problem: microphone input is not line-in. Microphones are an active connection, line-in is passive. If you connect the output from one device to the microphone port on another, you're likely to get distortion, and risk damaging the output device. Microphones are also mono, a good line-in will give you stereo or better.