I'm running into a similar issue. I'm trying to backup an EXT2 partitioned card to a FAT32 card. But when I try to copy the /pandora/ directory from the EXT2 card to the FAT32 card, I get Permission Denied.
Do I need to sudo something on my cards in order to do this?
EDIT: I think I found the issue do to the ownership issues.
tried sudo chown user /media/Card_Name on the EXT2 card, but that isn't working on the FAT32 card
then tried
rsync -av /media/Lexar128GB/pandora /media/2LEXAR128GB
but still had some permissions issues but the process is still ongoing as there is a lot to copy.
OK, so can't copy my /pandora/menu or appdata directory... Is this because the system is using them on the SD card?